Research Framework

1. Binary Taxonomy

Every paper is classified by answering two questions:

• What is the entity? — Raw material, organism, compound, chemical, structure, or hybrid ecosystem.
• What are we measuring? — Durability, chemical profile, joinability, sustainability, application, or biological response.

2. Claudito Workflow

1. DRAFT — Define scope and facets in drafts/compendio_scope.txt
2. HARVEST — Run one query per matrix cell; Grade A→B→C→D sequential search.
3. TRACK — Save references to subject-tree folders references/<subject>/<source__pub__year>/
4. SCREEN — Auto-screen + memo per subject.
5. ORGANIZE — Tag by facet values and chapter allocation.
6. WRITE — Draft per matrix cell.
7. SYNTHESIZE — Compile LaTeX sections.
8. SAVE — Version snapshot.

3. Ontological Grounding

To keep the taxonomy rigorous and reusable:

• Controlled Vocabulary — compendio_facets.json with IDs, definitions, and examples.
• Synonym Rings — Expand queries automatically (seawater = marine = saline = brine).
• Hierarchical Relations — Material → Metal → Steel → Stainless Steel.
• Search Query Templates — One template per matrix cell for reproducible harvests.

4. Known Gaps & Next Actions

• Create explicit facet definitions (compendio_facets.json)
• Build query templates per cell
• Run pilot harvest for 2-3 high-priority cells
• Validate auto-subjects against facet list
• Build cross-cell evidence map
• Export taxonomy to SKOS/JSON-LD